PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_BF71C1557.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 254aa    MW: 26836.9 Da    PI: 8.6676
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_BF71C1557.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY27.46.9e-09921252758
                            E-ST..T---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY  27 Ctsa..gCpvkkkversaedpkvveitYegeHnh 58 
                            C     g pvkkkv+rsaed +vv  tYegeHnh
  Traes_6DS_BF71C1557.2  92 CVELggGFPVKKKVQRSAEDSSVVGATYEGEHNH 125
                            555555669************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.09E-590127IPR003657WRKY domain
PfamPF031062.6E-591125IPR003657WRKY domain
PROSITE profilePS5081111.5291128IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-791127IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
PGINIASWSP WTPALHLRRR LVLPDTVRAL LHCITLLPRL LDLQGSAHVS NSSCYSTCSG  60
FHLLKISSIV TSASFYLAFT DQWCCCVNLC RCVELGGGFP VKKKVQRSAE DSSVVGATYE  120
GEHNHLRPMG AASRACATRG RGLVLCSISI NSSGPTTMLD LTKNGGGVQV VEAGEAQPDL  180
KKVCREVASP EFRAALVLRP RSQTSSAPPA SASGASAQRS SGICQDGIFR SLCVVGASSF  240
TGKLLILGSD CVLM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597064e-82AK359706.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101D16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW5H4L20.0W5H4L2_WHEAT; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.22e-09WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]